Lets try the ndo2db.debug file again but do one more change.
Open the /usr/local/nagios/etc/ndo2db.cfg file in a text editor, and change these lines from
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debug_level=-1
max_debug_file_size=1000000
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debug_level=2
max_debug_file_size=10000000
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service nagios stop
service ndo2db restart
service nagios start
Remove that host, save it and Apply the Config.
Then give the system a minutes to run and post the /usr/local/nagios/var/ndo2db.debug file here?
Check to see if the Groups are visible in XI.