We increased the the timeout to 30 seconds. I'm not seeing timeouts in the logs, but we're still seeing dropouts in the performance graphs.
Nagios_XI_1.jpg
cacti1.jpg
root@clesitonag1 ~]# tail -f /usr/local/nagios/var/npcd.log
[02-26-2014 13:12:58] NPCD: A thread was started on thread_counter = 0
[02-26-2014 13:12:58] NPCD: DEBUG: load 13.570000/40.000000
[02-26-2014 13:12:58] NPCD: ThreadCounter 1/4 File is 1393438364.perfdata.service
[02-26-2014 13:12:58] NPCD: Regular File: 1393438364.perfdata.service
[02-26-2014 13:12:58] NPCD: A thread was started on thread_counter = 1
[02-26-2014 13:12:58] NPCD: Processing file 1393438364.perfdata.host with ID 140737343776512 - going to exec /usr/local/nagios/libexec/process_perfdata.pl -n -b /usr/local/nagios/var/spool/perfdata//1393438364.perfdata.host
[02-26-2014 13:12:58] NPCD: Have to wait: Filecounter = 2 - thread_counter = 2
[02-26-2014 13:12:58] NPCD: Processing file 1393438364.perfdata.service with ID 140737199068928 - going to exec /usr/local/nagios/libexec/process_perfdata.pl -n -b /usr/local/nagios/var/spool/perfdata//1393438364.perfdata.service
[02-26-2014 13:12:58] NPCD: Processing file '1393438364.perfdata.host'
[02-26-2014 13:12:58] NPCD: Processing file '1393438364.perfdata.service'
[02-26-2014 13:13:00] NPCD: No more files to process... waiting for 10 seconds
tail -f /usr/local/nagios/var/perfdata.log
2014-02-21 13:05:53 [20794] [0] *** TIMEOUT: Please check your npcd.cfg
2014-02-21 13:05:53 [20794] [0] *** TIMEOUT: /usr/local/nagios/var/spool/perfdata//1393005918.perfdata.service-PID-20794 deleted
2014-02-21 13:05:53 [20794] [0] *** Timeout while processing Host: "smnwallpoe18.advanstar.com" Service: "FastEthernet0_4_Bandwidth"
2014-02-21 13:05:53 [20794] [0] *** process_perfdata.pl terminated on signal ALRM
2014-02-22 13:06:01 [34503] [0] *** TIMEOUT: Timeout after 30 secs. ***
2014-02-22 13:06:01 [34503] [0] *** TIMEOUT: Deleting current file to avoid NPCD loops
2014-02-22 13:06:01 [34503] [0] *** TIMEOUT: Please check your npcd.cfg
2014-02-22 13:06:01 [34503] [0] *** TIMEOUT: /usr/local/nagios/var/spool/perfdata//1393092318.perfdata.service-PID-34503 deleted
2014-02-22 13:06:01 [34503] [0] *** Timeout while processing Host: "smnwallpoe20.advanstar.com" Service: "FastEthernet0_14_Bandwidth"
2014-02-22 13:06:01 [34503] [0] *** process_perfdata.pl terminated on signal ALRM