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It sounds like this is just an issue of logging or are the checks not working? In other words, are you receiving the expected notifications from these active checks?
A few things to verify.
1. Make sure the object definition has active checks enabled. If this was initially set up for passive checks, it might be disabled.
2. The main Nagios configuration files, nagios.cfg, contains settings to turn on and off active checks on a program-wide basis. You'll also want to make sure logging is enabled in this file.