Waiting for Database Startup

[2evanowen]

I have been looking at this screen for a few hours after an upgrade:

Screen Shot 2015-07-16 at 1.54.19 PM.png

The other system in the cluster upgraded just fine instantly...
I've restarted elasticsearch, logstash, kibana multiple times still nothing.


Also this is happening even though the firewall is off......
[owen@radium conf.d]$ curl 'localhost:9200/_cat/health?v'
curl: (7) Failed connect to localhost:9200; Connection refused

Any ideas?

[jolson]

Let's take a peek at your elasticsearch logs. Something must have gone wrong during your upgrade.

Code: Select all

tail -n50 /var/log/elasticsearch/*.log

[2evanowen]

Code: Select all

[owen@radium conf.d]$ tail -n50 /var/log/elasticsearch/*.log
==> /var/log/elasticsearch/24af0eef-97fc-4e53-b001-a349e49e0f78_index_indexing_slowlog.log <==

==> /var/log/elasticsearch/24af0eef-97fc-4e53-b001-a349e49e0f78_index_search_slowlog.log <==

==> /var/log/elasticsearch/24af0eef-97fc-4e53-b001-a349e49e0f78.log <==

==> /var/log/elasticsearch/76900ee2-f769-413c-9948-850204a96b32_index_indexing_slowlog.log <==

==> /var/log/elasticsearch/76900ee2-f769-413c-9948-850204a96b32_index_search_slowlog.log <==

==> /var/log/elasticsearch/76900ee2-f769-413c-9948-850204a96b32.log <==
	at org.elasticsearch.common.inject.ModulesBuilder.createInjector(ModulesBuilder.java:59)
	at org.elasticsearch.node.internal.InternalNode.<init>(InternalNode.java:207)
	at org.elasticsearch.node.NodeBuilder.build(NodeBuilder.java:159)
	at org.elasticsearch.bootstrap.Bootstrap.setup(Bootstrap.java:77)
	at org.elasticsearch.bootstrap.Bootstrap.main(Bootstrap.java:245)
	at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:32)
[2015-07-16 10:48:37,233][INFO ][node                     ] [91614dae-5637-43b7-8ef9-caafa2163f77] version[1.6.0], pid[19938], build[cdd3ac4/2015-06-09T13:36:34Z]
[2015-07-16 10:48:37,234][INFO ][node                     ] [91614dae-5637-43b7-8ef9-caafa2163f77] initializing ...
[2015-07-16 10:48:37,249][INFO ][plugins                  ] [91614dae-5637-43b7-8ef9-caafa2163f77] loaded [knapsack-1.5.2.0-f340ad1], sites []
[2015-07-16 10:48:37,303][INFO ][env                      ] [91614dae-5637-43b7-8ef9-caafa2163f77] using [1] data paths, mounts [[/usr (/dev/mapper/vg_radium-lv_usr)]], net usable_space [2.1gb], net total_space [15.9gb], types [xfs]
[2015-07-16 10:48:38,494][ERROR][bootstrap                ] Exception
org.elasticsearch.common.inject.CreationException: Guice creation errors:

1) A binding to org.xbib.elasticsearch.knapsack.KnapsackService was already configured at _unknown_.
  at _unknown_

1 error
	at org.elasticsearch.common.inject.internal.Errors.throwCreationExceptionIfErrorsExist(Errors.java:344)
	at org.elasticsearch.common.inject.InjectorBuilder.initializeStatically(InjectorBuilder.java:151)
	at org.elasticsearch.common.inject.InjectorBuilder.build(InjectorBuilder.java:102)
	at org.elasticsearch.common.inject.Guice.createInjector(Guice.java:93)
	at org.elasticsearch.common.inject.Guice.createInjector(Guice.java:70)
	at org.elasticsearch.common.inject.ModulesBuilder.createInjector(ModulesBuilder.java:59)
	at org.elasticsearch.node.internal.InternalNode.<init>(InternalNode.java:207)
	at org.elasticsearch.node.NodeBuilder.build(NodeBuilder.java:159)
	at org.elasticsearch.bootstrap.Bootstrap.setup(Bootstrap.java:77)
	at org.elasticsearch.bootstrap.Bootstrap.main(Bootstrap.java:245)
	at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:32)
[2015-07-16 13:08:39,273][INFO ][node                     ] [91614dae-5637-43b7-8ef9-caafa2163f77] version[1.6.0], pid[13801], build[cdd3ac4/2015-06-09T13:36:34Z]
[2015-07-16 13:08:39,273][INFO ][node                     ] [91614dae-5637-43b7-8ef9-caafa2163f77] initializing ...
[2015-07-16 13:08:39,285][INFO ][plugins                  ] [91614dae-5637-43b7-8ef9-caafa2163f77] loaded [knapsack-1.5.2.0-f340ad1], sites []
[2015-07-16 13:08:39,322][INFO ][env                      ] [91614dae-5637-43b7-8ef9-caafa2163f77] using [1] data paths, mounts [[/usr (/dev/mapper/vg_radium-lv_usr)]], net usable_space [2.1gb], net total_space [15.9gb], types [xfs]
[2015-07-16 13:08:40,488][ERROR][bootstrap                ] Exception
org.elasticsearch.common.inject.CreationException: Guice creation errors:

1) A binding to org.xbib.elasticsearch.knapsack.KnapsackService was already configured at _unknown_.
  at _unknown_

1 error
	at org.elasticsearch.common.inject.internal.Errors.throwCreationExceptionIfErrorsExist(Errors.java:344)
	at org.elasticsearch.common.inject.InjectorBuilder.initializeStatically(InjectorBuilder.java:151)
	at org.elasticsearch.common.inject.InjectorBuilder.build(InjectorBuilder.java:102)
	at org.elasticsearch.common.inject.Guice.createInjector(Guice.java:93)
	at org.elasticsearch.common.inject.Guice.createInjector(Guice.java:70)
	at org.elasticsearch.common.inject.ModulesBuilder.createInjector(ModulesBuilder.java:59)
	at org.elasticsearch.node.internal.InternalNode.<init>(InternalNode.java:207)
	at org.elasticsearch.node.NodeBuilder.build(NodeBuilder.java:159)
	at org.elasticsearch.bootstrap.Bootstrap.setup(Bootstrap.java:77)
	at org.elasticsearch.bootstrap.Bootstrap.main(Bootstrap.java:245)
	at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:32)

==> /var/log/elasticsearch/abe16b19-381d-43e8-a874-20566198a504_index_indexing_slowlog.log <==

==> /var/log/elasticsearch/abe16b19-381d-43e8-a874-20566198a504_index_search_slowlog.log <==

==> /var/log/elasticsearch/abe16b19-381d-43e8-a874-20566198a504.log <==

==> /var/log/elasticsearch/elasticsearch_index_indexing_slowlog.log <==

==> /var/log/elasticsearch/elasticsearch_index_search_slowlog.log <==

==> /var/log/elasticsearch/elasticsearch.log <==

==> /var/log/elasticsearch/f33034b3-7c06-4561-9fb1-f16b8d6c354d_index_indexing_slowlog.log <==

==> /var/log/elasticsearch/f33034b3-7c06-4561-9fb1-f16b8d6c354d_index_search_slowlog.log <==

==> /var/log/elasticsearch/f33034b3-7c06-4561-9fb1-f16b8d6c354d.log <==

[jolson]

I see a few knapsack errors, please run the following commands to verify that knapsack is installed properly:

Code: Select all

ls /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/
md5sum /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/elasticsearch-knapsack-1.5.2.0.jar

The proper md5sum should be 8df53a4d45b913af0367c08b863e28b8.

Let's take a look at your elasticsearch configuration:

Code: Select all

cat /etc/sysconfig/elasticsearch
cat /usr/local/nagioslogserver/elasticsearch/config/elasticsearch.yml

[2evanowen]

looks good.

Code: Select all

[owen@radium conf.d]$ ls /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/
elasticsearch-knapsack-1.3.2.0.jar  elasticsearch-knapsack-1.5.2.0.jar

[owen@radium conf.d]$ md5sum /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/elasticsearch-knapsack-1.5.2.0.jar
8df53a4d45b913af0367c08b863e28b8  /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/elasticsearch-knapsack-1.5.2.0.jar
8df53a4d45b913af0367c08b863e28b8 -good

Code: Select all

[owen@radium conf.d]$ cat /etc/sysconfig/elasticsearch
# Directory where the Elasticsearch binary distribution resides
APP_DIR="/usr/local/nagioslogserver"
ES_HOME="$APP_DIR/elasticsearch"

# Heap Size (defaults to 256m min, 1g max)
# Nagios Log Server Default to 0.5 physical Memory
ES_HEAP_SIZE=$(expr $(free -m|awk '/^Mem:/{print $2}') / 2 )m

# Heap new generation
#ES_HEAP_NEWSIZE=

# max direct memory
#ES_DIRECT_SIZE=

# Additional Java OPTS
#ES_JAVA_OPTS=

# Maximum number of open files
MAX_OPEN_FILES=65535

# Maximum amount of locked memory
MAX_LOCKED_MEMORY=unlimited

# Maximum number of VMA (Virtual Memory Areas) a process can own
MAX_MAP_COUNT=262144

# Elasticsearch log directory
LOG_DIR=/var/log/elasticsearch

# Elasticsearch data directory
DATA_DIR="$ES_HOME/data"

# Elasticsearch work directory
WORK_DIR="$APP_DIR/tmp/elasticsearch"

# Elasticsearch conf directory
CONF_DIR="$ES_HOME/config"

# Elasticsearch configuration file (elasticsearch.yml)
CONF_FILE="$ES_HOME/config/elasticsearch.yml"

# User to run as, change this to a specific elasticsearch user if possible
# Also make sure, this user can write into the log directories in case you change them
# This setting only works for the init script, but has to be configured separately for systemd startup
ES_USER=nagios
ES_GROUP=nagios

# Configure restart on package upgrade (true, every other setting will lead to not restarting)
#RESTART_ON_UPGRADE=true

if [ "x$1" == "xstart" -o "x$1" == "xrestart" -o "x$1" == "xreload" -o "x$1" == "xforce-reload" ];then
	GET_ES_CONFIG_MESSAGE="$( php $APP_DIR/scripts/get_es_config.php )"
	GET_ES_CONFIG_RETURN=$?

	if [ "$GET_ES_CONFIG_RETURN" != "0" ]; then
		echo $GET_ES_CONFIG_MESSAGE
		exit 1
	else
		ES_JAVA_OPTS="$GET_ES_CONFIG_MESSAGE"
	fi
fi

Code: Select all

[owen@radium conf.d]$ cat /usr/local/nagioslogserver/elasticsearch/config/elasticsearch.yml
##################### Elasticsearch Configuration Example #####################

# This file contains an overview of various configuration settings,
# targeted at operations staff. Application developers should
# consult the guide at <http://elasticsearch.org/guide>.
#
# The installation procedure is covered at
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/setup.html>.
#
# Elasticsearch comes with reasonable defaults for most settings,
# so you can try it out without bothering with configuration.
#
# Most of the time, these defaults are just fine for running a production
# cluster. If you're fine-tuning your cluster, or wondering about the
# effect of certain configuration option, please _do ask_ on the
# mailing list or IRC channel [http://elasticsearch.org/community].

# Any element in the configuration can be replaced with environment variables
# by placing them in ${...} notation. For example:
#
# node.rack: ${RACK_ENV_VAR}

# For information on supported formats and syntax for the config file, see
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/setup-configuration.html>


################################### Cluster ###################################

# Cluster name identifies your cluster for auto-discovery. If you're running
# multiple clusters on the same network, make sure you're using unique names.
#
cluster.name: nagios_elasticsearch


#################################### Node #####################################

# Node names are generated dynamically on startup, so you're relieved
# from configuring them manually. You can tie this node to a specific name:
#
# node.name: "Franz Kafka"

# Every node can be configured to allow or deny being eligible as the master,
# and to allow or deny to store the data.
#
# Allow this node to be eligible as a master node (enabled by default):
#
# node.master: true
#
# Allow this node to store data (enabled by default):
#
# node.data: true

# You can exploit these settings to design advanced cluster topologies.
#
# 1. You want this node to never become a master node, only to hold data.
#    This will be the "workhorse" of your cluster.
#
# node.master: false
# node.data: true
#
# 2. You want this node to only serve as a master: to not store any data and
#    to have free resources. This will be the "coordinator" of your cluster.
#
# node.master: true
# node.data: false
#
# 3. You want this node to be neither master nor data node, but
#    to act as a "search load balancer" (fetching data from nodes,
#    aggregating results, etc.)
#
# node.master: false
# node.data: false

# Use the Cluster Health API [http://localhost:9200/_cluster/health], the
# Node Info API [http://localhost:9200/_nodes] or GUI tools
# such as <http://www.elasticsearch.org/overview/marvel/>,
# <http://github.com/karmi/elasticsearch-paramedic>,
# <http://github.com/lukas-vlcek/bigdesk> and
# <http://mobz.github.com/elasticsearch-head> to inspect the cluster state.

# A node can have generic attributes associated with it, which can later be used
# for customized shard allocation filtering, or allocation awareness. An attribute
# is a simple key value pair, similar to node.key: value, here is an example:
#
# node.rack: rack314

# By default, multiple nodes are allowed to start from the same installation location
# to disable it, set the following:
node.max_local_storage_nodes: 1


#################################### Index ####################################

# You can set a number of options (such as shard/replica options, mapping
# or analyzer definitions, translog settings, ...) for indices globally,
# in this file.
#
# Note, that it makes more sense to configure index settings specifically for
# a certain index, either when creating it or by using the index templates API.
#
# See <http://elasticsearch.org/guide/en/elasticsearch/reference/current/index-modules.html> and
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/indices-create-index.html>
# for more information.

# Set the number of shards (splits) of an index (5 by default):
#
# index.number_of_shards: 5

# Set the number of replicas (additional copies) of an index (1 by default):
#
# index.number_of_replicas: 1

# Note, that for development on a local machine, with small indices, it usually
# makes sense to "disable" the distributed features:
#
# index.number_of_shards: 1
# index.number_of_replicas: 0

# These settings directly affect the performance of index and search operations
# in your cluster. Assuming you have enough machines to hold shards and
# replicas, the rule of thumb is:
#
# 1. Having more *shards* enhances the _indexing_ performance and allows to
#    _distribute_ a big index across machines.
# 2. Having more *replicas* enhances the _search_ performance and improves the
#    cluster _availability_.
#
# The "number_of_shards" is a one-time setting for an index.
#
# The "number_of_replicas" can be increased or decreased anytime,
# by using the Index Update Settings API.
#
# Elasticsearch takes care about load balancing, relocating, gathering the
# results from nodes, etc. Experiment with different settings to fine-tune
# your setup.

# Use the Index Status API (<http://localhost:9200/A/_status>) to inspect
# the index status.


#################################### Paths ####################################

# Path to directory containing configuration (this file and logging.yml):
#
# path.conf: /path/to/conf

# Path to directory where to store index data allocated for this node.
#
# path.data: /path/to/data
#
# Can optionally include more than one location, causing data to be striped across
# the locations (a la RAID 0) on a file level, favouring locations with most free
# space on creation. For example:
#
# path.data: /path/to/data1,/path/to/data2

# Path to temporary files:
#
# path.work: /path/to/work

# Path to log files:
#
# path.logs: /path/to/logs

# Path to where plugins are installed:
#
# path.plugins: /path/to/plugins


#################################### Plugin ###################################

# If a plugin listed here is not installed for current node, the node will not start.
#
# plugin.mandatory: mapper-attachments,lang-groovy


################################### Memory ####################################

# Elasticsearch performs poorly when JVM starts swapping: you should ensure that
# it _never_ swaps.
#
# Set this property to true to lock the memory:
#
bootstrap.mlockall: true

# Make sure that the ES_MIN_MEM and ES_MAX_MEM environment variables are set
# to the same value, and that the machine has enough memory to allocate
# for Elasticsearch, leaving enough memory for the operating system itself.
#
# You should also make sure that the Elasticsearch process is allowed to lock
# the memory, eg. by using `ulimit -l unlimited`.


############################## Network And HTTP ###############################

# Elasticsearch, by default, binds itself to the 0.0.0.0 address, and listens
# on port [9200-9300] for HTTP traffic and on port [9300-9400] for node-to-node
# communication. (the range means that if the port is busy, it will automatically
# try the next port).

# Set the bind address specifically (IPv4 or IPv6):
#
# network.bind_host: 192.168.0.1

# Set the address other nodes will use to communicate with this node. If not
# set, it is automatically derived. It must point to an actual IP address.
#
# network.publish_host: 192.168.0.1

# Set both 'bind_host' and 'publish_host':
#
# network.host: 192.168.0.1

# Set a custom port for the node to node communication (9300 by default):
#
# transport.tcp.port: 9300

# Enable compression for all communication between nodes (disabled by default):
#
transport.tcp.compress: true

# Set a custom port to listen for HTTP traffic:
#
# http.port: 9200

# Set a custom allowed content length:
#
# http.max_content_length: 100mb

# Disable HTTP completely:
#
# http.enabled: false

# Set the HTTP host to listen to
#
http.host: "localhost"

################################### Gateway ###################################

# The gateway allows for persisting the cluster state between full cluster
# restarts. Every change to the state (such as adding an index) will be stored
# in the gateway, and when the cluster starts up for the first time,
# it will read its state from the gateway.

# There are several types of gateway implementations. For more information, see
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/modules-gateway.html>.

# The default gateway type is the "local" gateway (recommended):
#
# gateway.type: local

# Settings below control how and when to start the initial recovery process on
# a full cluster restart (to reuse as much local data as possible when using shared
# gateway).

# Allow recovery process after N nodes in a cluster are up:
#
# gateway.recover_after_nodes: 1

# Set the timeout to initiate the recovery process, once the N nodes
# from previous setting are up (accepts time value):
#
# gateway.recover_after_time: 5m

# Set how many nodes are expected in this cluster. Once these N nodes
# are up (and recover_after_nodes is met), begin recovery process immediately
# (without waiting for recover_after_time to expire):
#
# gateway.expected_nodes: 2


############################# Recovery Throttling #############################

# These settings allow to control the process of shards allocation between
# nodes during initial recovery, replica allocation, rebalancing,
# or when adding and removing nodes.

# Set the number of concurrent recoveries happening on a node:
#
# 1. During the initial recovery
#
# cluster.routing.allocation.node_initial_primaries_recoveries: 4
#
# 2. During adding/removing nodes, rebalancing, etc
#
# cluster.routing.allocation.node_concurrent_recoveries: 2

# Set to throttle throughput when recovering (eg. 100mb, by default 20mb):
#
# indices.recovery.max_bytes_per_sec: 20mb

# Set to limit the number of open concurrent streams when
# recovering a shard from a peer:
#
# indices.recovery.concurrent_streams: 5


################################## Discovery ##################################

# Discovery infrastructure ensures nodes can be found within a cluster
# and master node is elected. Multicast discovery is the default.

# Set to ensure a node sees N other master eligible nodes to be considered
# operational within the cluster. Its recommended to set it to a higher value
# than 1 when running more than 2 nodes in the cluster.
#
# discovery.zen.minimum_master_nodes: 1

# Set the time to wait for ping responses from other nodes when discovering.
# Set this option to a higher value on a slow or congested network
# to minimize discovery failures:
#
# discovery.zen.ping.timeout: 3s

# For more information, see
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/modules-discovery-zen.html>

# Unicast discovery allows to explicitly control which nodes will be used
# to discover the cluster. It can be used when multicast is not present,
# or to restrict the cluster communication-wise.
#
# 1. Disable multicast discovery (enabled by default):
#
discovery.zen.ping.multicast.enabled: false
#
# 2. Configure an initial list of master nodes in the cluster
#    to perform discovery when new nodes (master or data) are started:
#
discovery.zen.ping.unicast.hosts: ["localhost"]

# EC2 discovery allows to use AWS EC2 API in order to perform discovery.
#
# You have to install my butt-aws plugin for enabling the EC2 discovery.
#
# For more information, see
# <http://elasticsearch.org/guide/en/elasticsearch/reference/current/modules-discovery-ec2.html>
#
# See <http://elasticsearch.org/tutorials/elasticsearch-on-ec2/>
# for a step-by-step tutorial.

# GCE discovery allows to use Google Compute Engine API in order to perform discovery.
#
# You have to install my butt-gce plugin for enabling the GCE discovery.
#
# For more information, see <https://github.com/elasticsearch/elasticsearch-butt-gce>.

# Azure discovery allows to use Azure API in order to perform discovery.
#
# You have to install my butt-azure plugin for enabling the Azure discovery.
#
# For more information, see <https://github.com/elasticsearch/elasticsearch-butt-azure>.

################################## Slow Log ##################################

# Shard level query and fetch threshold logging.

#index.search.slowlog.threshold.query.warn: 10s
#index.search.slowlog.threshold.query.info: 5s
#index.search.slowlog.threshold.query.debug: 2s
#index.search.slowlog.threshold.query.trace: 500ms

#index.search.slowlog.threshold.fetch.warn: 1s
#index.search.slowlog.threshold.fetch.info: 800ms
#index.search.slowlog.threshold.fetch.debug: 500ms
#index.search.slowlog.threshold.fetch.trace: 200ms

#index.indexing.slowlog.threshold.index.warn: 10s
#index.indexing.slowlog.threshold.index.info: 5s
#index.indexing.slowlog.threshold.index.debug: 2s
#index.indexing.slowlog.threshold.index.trace: 500ms

################################## GC Logging ################################

#monitor.jvm.gc.young.warn: 1000ms
#monitor.jvm.gc.young.info: 700ms
#monitor.jvm.gc.young.debug: 400ms

#monitor.jvm.gc.old.warn: 10s
#monitor.jvm.gc.old.info: 5s
#monitor.jvm.gc.old.debug: 2s

[jolson]

You need to remove your old version of knapsack to start the ES database. The upgrade script is supposed to automate the removal - I'm not sure why it didn't in your case.

Code: Select all

rm /usr/local/nagioslogserver/elasticsearch/plugins/knapsack/elasticsearch-knapsack-1.3.2.0.jar  
service elasticsearch restart

[2evanowen]

That worked!

Thanks, feel free to mark this as resolved and lock it.